metapopulation_mobility_instant.h File Reference

#include "memilio/compartments/simulation.h"
#include "memilio/epidemiology/contact_matrix.h"
#include "memilio/epidemiology/dynamic_npis.h"
#include "memilio/math/eigen.h"
#include "memilio/math/euler.h"
#include "memilio/math/eigen_util.h"
#include "memilio/mobility/graph_simulation.h"
#include "memilio/utils/compiler_diagnostics.h"
#include "memilio/utils/time_series.h"

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Classes
class	mio::MobilityEdge< FP >
	represents the mobility between two nodes. More...
class	mio::MobilityParameters< FP >
	parameters that influence mobility. More...
class	mio::SimulationNode< FP, Sim >
	represents the simulation in one node of the graph. More...

Namespaces
	mio
	A collection of classes to simplify handling of matrix shapes in meta programming.

Typedefs
template<typename FP >
using	mio::MobilityCoefficientGroup = DampingMatrixExpressionGroup< FP, MobilityCoefficients< FP > >
	sum of time dependent mobility coefficients. More...
template<typename FP >
using	mio::MobilityCoefficients = DampingMatrixExpression< FP, VectorDampings< FP > >
	time dependent mobility coefficients. More...

Functions
template<typename FP , class Sim >
void	mio::advance_model (FP t, FP dt, SimulationNode< FP, Sim > &node)
	edge functor for mobility-based simulation. More...
template<typename FP , class Sim >
void	mio::apply_mobility (FP t, FP dt, MobilityEdge< FP > &mobilityEdge, SimulationNode< FP, Sim > &node_from, SimulationNode< FP, Sim > &node_to)
	edge functor for mobility-based simulation. More...
template<typename FP , IsCompartmentalModelSimulation< FP > Sim>
void	mio::calculate_mobility_returns (Eigen::Ref< typename TimeSeries< FP >::Vector > mobile_population, const Sim &sim, Eigen::Ref< const typename TimeSeries< FP >::Vector > total, FP t, FP dt)
	adjust number of people that changed node when they return according to the model. More...
template<typename FP , class Sim >
FP	mio::get_infections_relative (const SimulationNode< FP, Sim > &node, FP t, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	get the percantage of infected people of the total population in the node If dynamic NPIs are enabled, there needs to be an overload of get_infections_relative(model, y) for the Model type that can be found with argument-dependent lookup. More...
template<typename FP , class Sim >
auto	mio::get_mobility_factors (const SimulationNode< FP, Sim > &node, FP t, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	Get an additional mobility factor. More...
template<typename FP , class Sim >
void	mio::test_commuters (SimulationNode< FP, Sim > &node, Eigen::Ref< Eigen::VectorX< FP >> mobile_population, FP time)
	Test persons when moving from their source node. More...
template<typename FP , class Sim >
GraphSimulation< FP, Graph< SimulationNode< FP, Sim >, MobilityEdge< FP > >, FP, FP, void(*)(FP, FP, mio::MobilityEdge< FP > &, mio::SimulationNode< FP, Sim > &, mio::SimulationNode< FP, Sim > &), void(*)(FP, FP, mio::SimulationNode< FP, Sim > &)>	mio::make_mobility_sim (FP t0, FP dt, const Graph< SimulationNode< FP, Sim >, MobilityEdge< FP >> &graph)
	create a mobility-based simulation. More...
template<typename FP , class Sim >
GraphSimulation< FP, Graph< SimulationNode< FP, Sim >, MobilityEdge< FP > >, FP, FP, void(*)(FP, FP, mio::MobilityEdge< FP > &, mio::SimulationNode< FP, Sim > &, mio::SimulationNode< FP, Sim > &), void(*)(FP, FP, mio::SimulationNode< FP, Sim > &)>	mio::make_mobility_sim (FP t0, FP dt, Graph< SimulationNode< FP, Sim >, MobilityEdge< FP >> &&graph)
	create a mobility-based simulation. More...
template<typename FP , class Sim >
auto	mio::make_no_mobility_sim (FP t0, Graph< SimulationNode< FP, Sim >, MobilityEdge< FP >> &&graph)
	Create a graph simulation without mobility. More...
template<typename FP , class Sim >
auto	mio::make_no_mobility_sim (FP t0, Graph< SimulationNode< FP, Sim >, MobilityEdge< FP >> &graph)
	Create a graph simulation without mobility. More...