ode_secir/model.h File Reference

#include "memilio/compartments/flow_model.h"
#include "memilio/compartments/simulation.h"
#include "memilio/compartments/flow_simulation.h"
#include "memilio/epidemiology/populations.h"
#include "ode_secir/analyze_result.h"
#include "ode_secir/infection_state.h"
#include "ode_secir/parameters.h"
#include "memilio/math/smoother.h"
#include "memilio/math/eigen_util.h"
#include "memilio/math/interpolation.h"
#include <numbers>
#include <complex>

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Classes
class	mio::osecir::Model< FP >
class	mio::osecir::Simulation< FP, BaseT >
	specialization of compartment model simulation for secir models. More...

Namespaces
	mio
	A collection of classes to simplify handling of matrix shapes in meta programming.
	mio::osecir

Typedefs
using	mio::osecir::Flows = TypeList< Flow< InfectionState::Susceptible, InfectionState::Exposed >, Flow< InfectionState::Exposed, InfectionState::InfectedNoSymptoms >, Flow< InfectionState::InfectedNoSymptoms, InfectionState::InfectedSymptoms >, Flow< InfectionState::InfectedNoSymptoms, InfectionState::Recovered >, Flow< InfectionState::InfectedNoSymptomsConfirmed, InfectionState::InfectedSymptomsConfirmed >, Flow< InfectionState::InfectedNoSymptomsConfirmed, InfectionState::Recovered >, Flow< InfectionState::InfectedSymptoms, InfectionState::InfectedSevere >, Flow< InfectionState::InfectedSymptoms, InfectionState::Recovered >, Flow< InfectionState::InfectedSymptomsConfirmed, InfectionState::InfectedSevere >, Flow< InfectionState::InfectedSymptomsConfirmed, InfectionState::Recovered >, Flow< InfectionState::InfectedSevere, InfectionState::InfectedCritical >, Flow< InfectionState::InfectedSevere, InfectionState::Recovered >, Flow< InfectionState::InfectedSevere, InfectionState::Dead >, Flow< InfectionState::InfectedCritical, InfectionState::Dead >, Flow< InfectionState::InfectedCritical, InfectionState::Recovered > >

Functions
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
FP	mio::osecir::get_infections_relative (const Simulation< FP, Base > &model, FP t, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	get percentage of infections per total population. More...
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
auto	mio::osecir::get_mobility_factors (const Simulation< FP, Base > &sim, FP, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	Get mobility factors. More...
template<typename FP , class Base >
IOResult< FP >	mio::osecir::get_reproduction_number (FP t_value, const Simulation< FP, Base > &sim)
	Computes the reproduction number at a given time point of the Simulation. More...
template<typename FP , class Base >
IOResult< FP >	mio::osecir::get_reproduction_number (size_t t_idx, const Simulation< FP, Base > &sim)
	Computes the reproduction number at a given index time of the Model output obtained by the Simulation. More...
template<typename FP , class Base >
Eigen::VectorX< FP >	mio::osecir::get_reproduction_numbers (const Simulation< FP, Base > &sim)
	Computes the reproduction number for all time points of the Model output obtained by the Simulation. More...
template<typename FP >
auto	mio::osecir::simulate (FP t0, FP tmax, FP dt, const Model< FP > &model, std::unique_ptr< OdeIntegratorCore< FP >> &&integrator_core=nullptr)
	Specialization of simulate for SECIR models using Simulation. More...
template<typename FP >
auto	mio::osecir::simulate_flows (FP t0, FP tmax, FP dt, const Model< FP > &model, std::unique_ptr< OdeIntegratorCore< FP >> &&integrator_core=nullptr)
	Specialization of simulate for SECIR models using the FlowSimulation. More...
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
auto	mio::osecir::test_commuters (Simulation< FP, Base > &sim, Eigen::Ref< Eigen::VectorX< FP >> mobile_population, FP time)