ode_secirts/parameters.h File Reference

#include "memilio/math/eigen.h"
#include "memilio/utils/uncertain_value.h"
#include "memilio/math/adapt_rk.h"
#include "memilio/epidemiology/age_group.h"
#include "memilio/epidemiology/simulation_day.h"
#include "memilio/epidemiology/uncertain_matrix.h"
#include "memilio/epidemiology/dynamic_npis.h"
#include "memilio/utils/parameter_set.h"
#include "memilio/utils/custom_index_array.h"
#include <vector>

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Classes
struct	mio::osecirts::ContactPatterns< FP >
	The contact patterns within the society are modelled using an UncertainContactMatrix. More...
struct	mio::osecirts::CriticalPerSevere< FP >
	The percentage of ICU patients per hospitalized patients in the SECIRTS model. More...
struct	mio::osecirts::DailyBoosterVaccinations< FP >
	Total number of booster vaccinations up to the given day. More...
struct	mio::osecirts::DailyFullVaccinations< FP >
	Total number of full vaccinations up to the given day. More...
struct	mio::osecirts::DailyPartialVaccinations< FP >
	Total number of first vaccinations up to the given day. More...
struct	mio::osecirts::DaysUntilEffectiveBoosterImmunity< FP >
	Time in days until booster vaccine dose takes full effect. More...
struct	mio::osecirts::DaysUntilEffectiveImprovedVaccination< FP >
	Time in days until second vaccine dose takes full effect. More...
struct	mio::osecirts::DaysUntilEffectivePartialVaccination< FP >
	Time in days until first vaccine dose takes full effect. More...
struct	mio::osecirts::DeathsPerCritical< FP >
	The percentage of dead patients per ICU patients in the SECIRTS model. More...
struct	mio::osecirts::DynamicNPIsImplementationDelay< FP >
	The delay with which DynamicNPIs are implemented and enforced after exceedance of threshold. More...
struct	mio::osecirts::DynamicNPIsInfectedSymptoms< FP >
	The NPIs that are enacted if certain infection thresholds are exceeded. More...
struct	mio::osecirts::ICUCapacity< FP >
	Represents the icu capacity in the SECIRTS model. More...
struct	mio::osecirts::InfectiousnessNewVariant< FP >
	Represents the relative infectiousness of a new variant. More...
struct	mio::osecirts::MaxRiskOfInfectionFromSymptomatic< FP >
	Risk of infection from symptomatic cases increases if test and trace capacity is exceeded. More...
class	mio::osecirts::Parameters< FP >
	Parameters of the age-resolved SECIRS-type model with high temporary immunity upon immunization and waning immunity over time. More...
struct	mio::osecirts::RecoveredPerInfectedNoSymptoms< FP >
	The percentage of asymptomatic cases in the SECIRTS model. More...
struct	mio::osecirts::ReducExposedImprovedImmunity< FP >
	Factor to reduce infection risk for persons with improved immunity. More...
struct	mio::osecirts::ReducExposedPartialImmunity< FP >
	Factor to reduce infection risk for persons with partial immunity. More...
struct	mio::osecirts::ReducInfectedSevereCriticalDeadImprovedImmunity< FP >
	Factor to reduce risk of hospitalization for persons with improved immunity. More...
struct	mio::osecirts::ReducInfectedSevereCriticalDeadPartialImmunity< FP >
	Factor to reduce risk of hospitalization for persons with partial immunity. More...
struct	mio::osecirts::ReducInfectedSymptomsImprovedImmunity< FP >
	Factor to reduce risk of developing symptoms for persons with improved immunity. More...
struct	mio::osecirts::ReducInfectedSymptomsPartialImmunity< FP >
	Factor to reduce risk of developing symptoms for persons with partial immunity. More...
struct	mio::osecirts::ReducTimeInfectedMild< FP >
	Factor to reduce infectious time of persons with partial or improved immunity. More...
struct	mio::osecirts::RelativeTransmissionNoSymptoms< FP >
	The relative infectability from individuals located in the InfectedNoSymptoms infection state. More...
struct	mio::osecirts::RiskOfInfectionFromSymptomatic< FP >
	The risk of infection from symptomatic cases in the SECIRTS model. More...
struct	mio::osecirts::Seasonality< FP >
	The seasonality in the SECIRTS-type model. More...
struct	mio::osecirts::SeverePerInfectedSymptoms< FP >
	The percentage of hospitalized patients per infected patients in the SECIRTS model. More...
struct	mio::osecirts::StartDay< FP >
	The start day in the SECIRTS-type model. More...
struct	mio::osecirts::StartDayNewVariant< FP >
	The start day of a new variant in the SECIRTS-type model. More...
struct	mio::osecirts::TestAndTraceCapacity< FP >
	The Capacity to test and trace contacts of infected for quarantine per day. More...
struct	mio::osecirts::TestAndTraceCapacityMaxRiskNoSymptoms< FP >
	Multiplier for the test and trace capacity to determine when it is considered overloaded from cases without symptoms. More...
struct	mio::osecirts::TestAndTraceCapacityMaxRiskSymptoms< FP >
	Multiplier for the test and trace capacity to determine when it is considered overloaded by symptomatic cases. More...
struct	mio::osecirts::TimeExposed< FP >
	Represents the mean latent time in days for different age groups. More...
struct	mio::osecirts::TimeInfectedCritical< FP >
	The time people are treated by ICU before returning home in the SECIRTS model in day unit. More...
struct	mio::osecirts::TimeInfectedNoSymptoms< FP >
	The (mean) time in day unit for asymptomatic cases that are infected but have not yet developed symptoms. More...
struct	mio::osecirts::TimeInfectedSevere< FP >
	The time people are 'simply' hospitalized before returning home in the SECIRTS model in day unit. More...
struct	mio::osecirts::TimeInfectedSymptoms< FP >
	The infectious time for symptomatic cases that are infected but who do not need to be hospitalized in the SECIRTS model in day unit. More...
struct	mio::osecirts::TimeTemporaryImmunityII< FP >
	The time people stays immune after infection or vaccination located in the partial or improved immunity layer in day unit. More...
struct	mio::osecirts::TimeTemporaryImmunityPI< FP >
	The time people stays immune after infection or vaccination located in naive immunity layer in day unit. More...
struct	mio::osecirts::TimeWaningImprovedImmunity< FP >
	Time in days to describe waning immunity to get susceptible from improved to partial immunity layer. More...
struct	mio::osecirts::TimeWaningPartialImmunity< FP >
	Time in days to describe waning immunity to get susceptible from partial to naive immunity layer. More...
struct	mio::osecirts::TransmissionProbabilityOnContact< FP >
	The probability of getting infected from a single contact. More...

Namespaces
	mio
	A collection of classes to simplify handling of matrix shapes in meta programming.
	mio::osecirts

Typedefs
template<typename FP >
using	mio::osecirts::ParametersBase = ParameterSet< StartDay< FP >, Seasonality< FP >, ICUCapacity< FP >, TestAndTraceCapacity< FP >, TestAndTraceCapacityMaxRiskNoSymptoms< FP >, TestAndTraceCapacityMaxRiskSymptoms< FP >, ContactPatterns< FP >, DynamicNPIsInfectedSymptoms< FP >, TimeExposed< FP >, TimeInfectedNoSymptoms< FP >, TimeInfectedSymptoms< FP >, TimeInfectedSevere< FP >, TimeInfectedCritical< FP >, TimeWaningPartialImmunity< FP >, TimeWaningImprovedImmunity< FP >, TimeTemporaryImmunityPI< FP >, TimeTemporaryImmunityII< FP >, TransmissionProbabilityOnContact< FP >, RelativeTransmissionNoSymptoms< FP >, RecoveredPerInfectedNoSymptoms< FP >, RiskOfInfectionFromSymptomatic< FP >, MaxRiskOfInfectionFromSymptomatic< FP >, SeverePerInfectedSymptoms< FP >, CriticalPerSevere< FP >, DeathsPerCritical< FP >, DaysUntilEffectivePartialVaccination< FP >, DaysUntilEffectiveImprovedVaccination< FP >, DaysUntilEffectiveBoosterImmunity< FP >, DailyFullVaccinations< FP >, DailyPartialVaccinations< FP >, DailyBoosterVaccinations< FP >, ReducExposedPartialImmunity< FP >, ReducExposedImprovedImmunity< FP >, ReducInfectedSymptomsPartialImmunity< FP >, ReducInfectedSymptomsImprovedImmunity< FP >, ReducInfectedSevereCriticalDeadPartialImmunity< FP >, ReducInfectedSevereCriticalDeadImprovedImmunity< FP >, ReducTimeInfectedMild< FP >, InfectiousnessNewVariant< FP >, DynamicNPIsImplementationDelay< FP >, StartDayNewVariant< FP > >