mio::osecirts::Model< FP > Class Template Reference

#include <model.h>

Inheritance diagram for mio::osecirts::Model< FP >:

Collaboration diagram for mio::osecirts::Model< FP >:

Public Member Functions
void	get_flows (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> flows) const override
	Model (const Populations &pop, const ParameterSet &params)
	Model (int num_agegroups)
template<class IOContext >
void	serialize (IOContext &io) const
	serialize this. More...
Eigen::VectorX< FP >	vaccinations_at (const FP t, const CustomIndexArray< FP, AgeGroup, SimulationDay > &daily_vaccinations, const FP eps=0.15) const
	Calculates smoothed vaccinations for a given time point. More...
Public Member Functions inherited from mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >
	FlowModel (Args... args)
	Default constructor, forwarding args to Base constructor. More...
void	get_derivatives (Eigen::Ref< const Eigen::VectorX< FP >> flows, Eigen::Ref< Eigen::VectorX< FP >> dydt) const
	Compute the right-hand-side of the ODE dydt = f(y, t) from flow values. More...
void	get_derivatives (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> dydt) const final
	Compute the right-hand-side f(y, t) of the ODE and store it in dydt. More...
constexpr size_t	get_flat_flow_index () const
	A flat index into an array of flows (as computed by get_flows), if the only used category in Pop is Comp. More...
size_t	get_flat_flow_index (const FlowIndex &indices) const
	A flat index into an array of flows (as computed by get_flows), given the indices of each category. More...
Eigen::VectorX< FP >	get_initial_flows () const
	Initial values for flows. More...
Public Member Functions inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
bool	apply_constraints ()
	Checks whether the model satisfies all constraints. More...
bool	check_constraints () const
	Checks that the model satisfies all constraints (e.g. More...
	CompartmentalModel (CompartmentalModel &&)=default
	CompartmentalModel (const CompartmentalModel &)=default
	CompartmentalModel (Populations const &po, ParameterSet const &pa)
	CompartmentalModel default constructor. More...
void	eval_right_hand_side (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> dydt) const
	This function evaluates the right-hand-side f of the ODE dydt = f(y, t). More...
Eigen::VectorX< FP >	get_initial_values () const
	Get the initial conditions for the ODE dydt = f(y, t). More...
CompartmentalModel &	operator= (CompartmentalModel &&)=default
CompartmentalModel &	operator= (const CompartmentalModel &)=default
virtual	~CompartmentalModel ()=default

Static Public Member Functions
template<class IOContext >
static IOResult< Model >	deserialize (IOContext &io)
	deserialize an object of this class. More...

Private Types
using	Base = FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >

Additional Inherited Members
Public Types inherited from mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >
using	Base = CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
Public Types inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
using	Compartments = InfectionState
using	ParameterSet = Parameters< FP >
using	Populations = mio::Populations< FP, AgeGroup, InfectionState >
Public Attributes inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
ParameterSet	parameters
Populations	populations

Member Typedef Documentation

Base

template<typename FP >

using mio::osecirts::Model< FP >::Base = FlowModel<FP, InfectionState, mio::Populations<FP, AgeGroup, InfectionState>, Parameters<FP>, Flows>

private

Constructor & Destructor Documentation

Model() [1/2]

template<typename FP >

mio::osecirts::Model< FP >::Model ( const Populations &  pop, const ParameterSet &  params  )

inline

Model() [2/2]

template<typename FP >

mio::osecirts::Model< FP >::Model ( int  num_agegroups )

inline

Member Function Documentation

deserialize()

template<typename FP >

template<class IOContext >

static IOResult<Model> mio::osecirts::Model< FP >::deserialize ( IOContext &  io )

inlinestatic

deserialize an object of this class.

See also

mio::deserialize

get_flows()

template<typename FP >

void mio::osecirts::Model< FP >::get_flows ( Eigen::Ref< const Eigen::VectorX< FP >>  pop, Eigen::Ref< const Eigen::VectorX< FP >>  y, FP  t, Eigen::Ref< Eigen::VectorX< FP >>  flows  ) const

inlineoverridevirtual

Implements mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >.

serialize()

template<typename FP >

template<class IOContext >

void mio::osecirts::Model< FP >::serialize ( IOContext &  io ) const

inline

serialize this.

See also

mio::serialize

vaccinations_at()

template<typename FP >

Eigen::VectorX<FP> mio::osecirts::Model< FP >::vaccinations_at ( const FP  t, const CustomIndexArray< FP, AgeGroup, SimulationDay > &  daily_vaccinations, const FP  eps = 0.15  ) const

inline

Calculates smoothed vaccinations for a given time point.

This function calculates the number of vaccinations for each age group at a given time t, based on daily vaccinations data. The smoothing is done using a cosine function.

Parameters

t	The time in the simulation.
daily_vaccinations	The daily vaccinations data, indexed by age group and simulation day.
eps	[Default: 0.15] The smoothing factor used in the cosine smoothing function.

Returns

A vector containing the number of vaccinations for each age group at time t.