mio::osecirvvs::Parameters< FP > Class Template Reference

Parameters of an age-resolved SECIR/SECIHURD model with paths for partial and improved immunity through vaccination. More...

#include <parameters.h>

Inheritance diagram for mio::osecirvvs::Parameters< FP >:

Collaboration diagram for mio::osecirvvs::Parameters< FP >:

Public Member Functions
bool	apply_constraints ()
	Checks whether all Parameters satisfy their corresponding constraints and applies them, if they do not. More...
bool	check_constraints () const
	Checks whether all Parameters satisfy their corresponding constraints and logs an error if constraints are not satisfied. More...
FP &	get_commuter_nondetection ()
	Percentage of infected commuters that are not detected. More...
FP	get_commuter_nondetection () const
FP &	get_end_commuter_detection ()
	Time in simulation after which no infected commuters are detected. More...
FP	get_end_commuter_detection () const
FP &	get_end_dynamic_npis ()
	Time in simulation after which no dynamic NPIs are applied. More...
FP	get_end_dynamic_npis () const
AgeGroup	get_num_groups () const
FP &	get_start_commuter_detection ()
	Time in simulation before which no infected commuters are detected. More...
FP	get_start_commuter_detection () const
	Parameters (AgeGroup num_agegroups)
Public Member Functions inherited from mio::ParameterSet< Tags >
template<class Tag >
ParameterTagTraits< Tag >::Type &	get ()
	get value of a parameter More...
template<class Tag >
const ParameterTagTraits< Tag >::Type &	get () const
	get value of a parameter More...
bool	operator!= (const ParameterSet &b) const
bool	operator== (const ParameterSet &b) const
template<class Dummy = void, class = std::enable_if_t< details::AllOf<has_get_default_member_function, ParameterTagTraits<Tags>...>::value, Dummy>>
	ParameterSet ()
	default initializing constructor Initializes each parameter using either the get_default function defined in the parameter tag or the default constructor. More...
template<class Dummy = void, class = std::enable_if_t<details::AllOf<std::is_default_constructible, typename Tags::Type...>::value, Dummy>>
	ParameterSet (NoDefaultInit)
	Non-initializing default constructor. More...
template<class T1 , class... TN, class = std::enable_if_t< !std::is_same_v<std::decay_t<T1>, ParameterSet> && details::AllOf<details::BindTail<has_get_default_member_function, T1, TN...>::template type, ParameterTagTraits<Tags>...>::value>>
	ParameterSet (T1 &&arg1, TN &&... argn)
	default initializing constructor. More...
template<class IOContext >
void	serialize (IOContext &io) const
	serialize this. More...
template<class Tag >
void	set (const typename ParameterTagTraits< Tag >::Type &value)
	set value of a parameter More...
template<class Tag , class T >
void	set (T &&arg)
	set value of a parameter More...
template<class Tag , class... T>
std::enable_if_t< has_get_default_member_function< ParameterTagTraits< Tag >, T... >::value, void >	set_default (T &&... ts)
	(re)set parameter to its default value More...

Static Public Member Functions
template<class IOContext >
static IOResult< Parameters >	deserialize (IOContext &io)
	deserialize an object of this class. More...
Static Public Member Functions inherited from mio::ParameterSet< Tags >
template<class IOContext >
static IOResult< ParameterSet >	deserialize (IOContext &io)
	deserialize an object of this class. More...
static constexpr size_t	size ()
	returns the number of parameters More...

Private Member Functions
	Parameters (ParametersBase< FP > &&base)

Private Attributes
FP	m_commuter_nondetection = 0.0
FP	m_end_commuter_detection = 0.0
FP	m_end_dynamic_npis = std::numeric_limits<FP>::max()
AgeGroup	m_num_groups
FP	m_start_commuter_detection = 0.0

Detailed Description

template<typename FP>
class mio::osecirvvs::Parameters< FP >

Parameters of an age-resolved SECIR/SECIHURD model with paths for partial and improved immunity through vaccination.

Constructor & Destructor Documentation

Parameters() [1/2]

template<typename FP >

mio::osecirvvs::Parameters< FP >::Parameters ( AgeGroup  num_agegroups )

inline

Parameters() [2/2]

template<typename FP >

mio::osecirvvs::Parameters< FP >::Parameters ( ParametersBase< FP > &&  base )

inlineprivate

Member Function Documentation

apply_constraints()

template<typename FP >

bool mio::osecirvvs::Parameters< FP >::apply_constraints ( )

inline

Checks whether all Parameters satisfy their corresponding constraints and applies them, if they do not.

Time spans cannot be negative and probabilities can only take values between [0,1].

Attention: This function should be used with care. It is necessary for some test problems to run through quickly, but in a manual execution of an example, check_constraints() may be preferred. Note that the apply_constraints() function can and will not set Parameters to meaningful values in an epidemiological or virological context, as all models are designed to be transferable to multiple diseases. Consequently, only acceptable (like 0 or 1 for probabilities or small positive values for time spans) values are set here and a manual adaptation may often be necessary to have set meaningful values.

Returns

Returns true if one ore more constraint were corrected, false otherwise.

check_constraints()

template<typename FP >

bool mio::osecirvvs::Parameters< FP >::check_constraints ( ) const

inline

Checks whether all Parameters satisfy their corresponding constraints and logs an error if constraints are not satisfied.

Returns

Returns true if one constraint is not satisfied, otherwise false.

deserialize()

template<typename FP >

template<class IOContext >

static IOResult<Parameters> mio::osecirvvs::Parameters< FP >::deserialize ( IOContext &  io )

inlinestatic

deserialize an object of this class.

See also

epi::deserialize

get_commuter_nondetection() [1/2]

template<typename FP >

FP& mio::osecirvvs::Parameters< FP >::get_commuter_nondetection ( )

inline

Percentage of infected commuters that are not detected.

get_commuter_nondetection() [2/2]

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::get_commuter_nondetection ( ) const

inline

get_end_commuter_detection() [1/2]

template<typename FP >

FP& mio::osecirvvs::Parameters< FP >::get_end_commuter_detection ( )

inline

Time in simulation after which no infected commuters are detected.

get_end_commuter_detection() [2/2]

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::get_end_commuter_detection ( ) const

inline

get_end_dynamic_npis() [1/2]

template<typename FP >

FP& mio::osecirvvs::Parameters< FP >::get_end_dynamic_npis ( )

inline

Time in simulation after which no dynamic NPIs are applied.

get_end_dynamic_npis() [2/2]

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::get_end_dynamic_npis ( ) const

inline

get_num_groups()

template<typename FP >

AgeGroup mio::osecirvvs::Parameters< FP >::get_num_groups ( ) const

inline

get_start_commuter_detection() [1/2]

template<typename FP >

FP& mio::osecirvvs::Parameters< FP >::get_start_commuter_detection ( )

inline

Time in simulation before which no infected commuters are detected.

get_start_commuter_detection() [2/2]

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::get_start_commuter_detection ( ) const

inline

Member Data Documentation

m_commuter_nondetection

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::m_commuter_nondetection = 0.0

private

m_end_commuter_detection

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::m_end_commuter_detection = 0.0

private

m_end_dynamic_npis

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::m_end_dynamic_npis = std::numeric_limits<FP>::max()

private

m_num_groups

template<typename FP >

AgeGroup mio::osecirvvs::Parameters< FP >::m_num_groups

private

m_start_commuter_detection

template<typename FP >

FP mio::osecirvvs::Parameters< FP >::m_start_commuter_detection = 0.0

private