glsecir Namespace Reference
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CPP API
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mio::glsecir Namespace Reference
Classes | |
| struct | ContactPatterns |
| The contact patterns within the society are modelled using an UncertainContactMatrix. More... | |
| class | Model |
| Class that defines an GLCT-SECIR model. More... | |
| class | Parameters |
| Parameters of an GLCT-SECIR model. More... | |
| struct | RelativeTransmissionNoSymptoms |
| The relative InfectedNoSymptoms infectability. More... | |
| struct | RiskOfInfectionFromSymptomatic |
| The risk of infection from symptomatic cases in the GLCT-SECIR model. More... | |
| struct | Seasonality |
| The seasonality in the GLCT-SECIR model. More... | |
| struct | StartDay |
| The start day in the GLCT-SECIR model. More... | |
| struct | StartingProbabilitiesExposed |
| Vector with the probability to start in any of the subcompartments of the Exposed compartment. More... | |
| struct | StartingProbabilitiesInfectedCritical |
| Vector with the probability to start in any of the subcompartments of the InfectedCritical compartment. More... | |
| struct | StartingProbabilitiesInfectedNoSymptoms |
| Vector with the probability to start in any of the subcompartments of the InfectedNoSymptoms compartment. More... | |
| struct | StartingProbabilitiesInfectedSevere |
| Vector with the probability to start in any of the subcompartments of the InfectedSevere compartment. More... | |
| struct | StartingProbabilitiesInfectedSymptoms |
| Vector with the probability to start in any of the subcompartments of the InfectedSymptoms compartment. More... | |
| struct | TransitionMatrixExposedToInfectedNoSymptoms |
| Transition matrix of the Exposed compartment. More... | |
| struct | TransitionMatrixInfectedCriticalToDead |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedCritical compartment before death. More... | |
| struct | TransitionMatrixInfectedCriticalToRecovered |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedCritical compartment before recovery. More... | |
| struct | TransitionMatrixInfectedNoSymptomsToInfectedSymptoms |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedNoSymptoms compartment before developing symptoms. More... | |
| struct | TransitionMatrixInfectedNoSymptomsToRecovered |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedNoSymptoms compartment before recovery. More... | |
| struct | TransitionMatrixInfectedSevereToInfectedCritical |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedSevere compartment before treated by ICU. More... | |
| struct | TransitionMatrixInfectedSevereToRecovered |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedSevere compartment before recovery. More... | |
| struct | TransitionMatrixInfectedSymptomsToInfectedSevere |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedNoSymptoms compartment before going to hospital. More... | |
| struct | TransitionMatrixInfectedSymptomsToRecovered |
| Transition matrix of the phase-type distribution describing the stay time in the InfectedSymptoms compartment before recovery. More... | |
| struct | TransmissionProbabilityOnContact |
| Probability of getting infected from a contact. More... | |
Typedefs | |
| template<typename FP > | |
| using | ParametersBase = ParameterSet< StartingProbabilitiesExposed< FP >, TransitionMatrixExposedToInfectedNoSymptoms< FP >, StartingProbabilitiesInfectedNoSymptoms< FP >, TransitionMatrixInfectedNoSymptomsToInfectedSymptoms< FP >, TransitionMatrixInfectedNoSymptomsToRecovered< FP >, StartingProbabilitiesInfectedSymptoms< FP >, TransitionMatrixInfectedSymptomsToInfectedSevere< FP >, TransitionMatrixInfectedSymptomsToRecovered< FP >, StartingProbabilitiesInfectedSevere< FP >, TransitionMatrixInfectedSevereToInfectedCritical< FP >, TransitionMatrixInfectedSevereToRecovered< FP >, StartingProbabilitiesInfectedCritical< FP >, TransitionMatrixInfectedCriticalToDead< FP >, TransitionMatrixInfectedCriticalToRecovered< FP >, TransmissionProbabilityOnContact< FP >, ContactPatterns< FP >, RelativeTransmissionNoSymptoms< FP >, RiskOfInfectionFromSymptomatic< FP >, StartDay< FP >, Seasonality< FP > > |
Enumerations | |
| enum class | InfectionState { Susceptible = 0 , Exposed = 1 , InfectedNoSymptoms = 2 , InfectedSymptoms = 3 , InfectedSevere = 4 , InfectedCritical = 5 , Recovered = 6 , Dead = 7 , Count = 8 } |
| The InfectionState enum describes the basic categories for the infection state of persons. More... | |
Typedef Documentation
◆ ParametersBase
template<typename FP >
Enumeration Type Documentation
◆ InfectionState
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