mio::lsecir Namespace Reference

Classes
struct	ContactPatterns
	The contact patterns within the society are modelled using an UncertainContactMatrix. More...
struct	CriticalPerSevere
	The percentage of ICU patients per hospitalized patients for each group in the SECIR model. More...
struct	DeathsPerCritical
	The percentage of dead patients per ICU patients for each group in the SECIR model. More...
class	Initializer
	Class that can be used to compute an initialization vector out of flows for an LCT Model with division in groups. More...
class	Model
	Class that defines an LCT-SECIR model. More...
class	Parameters
	Parameters of an LCT-SECIR model. More...
struct	RecoveredPerInfectedNoSymptoms
	The percentage of asymptomatic cases for each group in the SECIR model. More...
struct	RelativeTransmissionNoSymptoms
	The relative InfectedNoSymptoms infectability for each group. More...
struct	RiskOfInfectionFromSymptomatic
	The risk of infection from symptomatic cases for each group in the SECIR model. More...
struct	Seasonality
	The seasonality in the LCT-SECIR model. More...
struct	SeverePerInfectedSymptoms
	The percentage of hospitalized patients per infected patients for each group in the SECIR model. More...
struct	StartDay
	The start day in the LCT SECIR model. More...
struct	TimeExposed
	Average time spent in the Exposed compartment for each group. More...
struct	TimeInfectedCritical
	Average time treated by ICU before dead or recover for each group in the SECIR model in day unit. More...
struct	TimeInfectedNoSymptoms
	Average time spent in the TimeInfectedNoSymptoms before developing symptoms or recover for each group in the SECIR model in day unit. More...
struct	TimeInfectedSevere
	Average time being in the Hospital before treated by ICU or recover for each group in the SECIR model in day unit. More...
struct	TimeInfectedSymptoms
	Average time spent in the TimeInfectedSymptoms before going to hospital or recover for each group in the SECIR model in day unit. More...
struct	TransmissionProbabilityOnContact
	Probability of getting infected from a contact for each group. More...

Typedefs
template<typename FP >
using	ParametersBase = ParameterSet< TimeExposed< FP >, TimeInfectedNoSymptoms< FP >, TimeInfectedSymptoms< FP >, TimeInfectedSevere< FP >, TimeInfectedCritical< FP >, TransmissionProbabilityOnContact< FP >, ContactPatterns< FP >, RelativeTransmissionNoSymptoms< FP >, RiskOfInfectionFromSymptomatic< FP >, RecoveredPerInfectedNoSymptoms< FP >, SeverePerInfectedSymptoms< FP >, CriticalPerSevere< FP >, DeathsPerCritical< FP >, StartDay< FP >, Seasonality< FP > >

Enumerations
enum class	InfectionState {   Susceptible = 0 , Exposed = 1 , InfectedNoSymptoms = 2 , InfectedSymptoms = 3 ,   InfectedSevere = 4 , InfectedCritical = 5 , Recovered = 6 , Dead = 7 ,   Count = 8 }
	The InfectionState enum describes the basic categories for the infection state of persons. More...
enum class	InfectionTransition {   SusceptibleToExposed = 0 , ExposedToInfectedNoSymptoms = 1 , InfectedNoSymptomsToInfectedSymptoms = 2 , InfectedNoSymptomsToRecovered = 3 ,   InfectedSymptomsToInfectedSevere = 4 , InfectedSymptomsToRecovered = 5 , InfectedSevereToInfectedCritical = 6 , InfectedSevereToRecovered = 7 ,   InfectedCriticalToDead = 8 , InfectedCriticalToRecovered = 9 , Count = 10 }
	The InfectionTransition enum describes the possible transitions of the infectious state of persons. More...

Typedef Documentation

ParametersBase

template<typename FP >

using mio::lsecir::ParametersBase = typedef ParameterSet<TimeExposed<FP>, TimeInfectedNoSymptoms<FP>, TimeInfectedSymptoms<FP>, TimeInfectedSevere<FP>, TimeInfectedCritical<FP>, TransmissionProbabilityOnContact<FP>, ContactPatterns<FP>, RelativeTransmissionNoSymptoms<FP>, RiskOfInfectionFromSymptomatic<FP>, RecoveredPerInfectedNoSymptoms<FP>, SeverePerInfectedSymptoms<FP>, CriticalPerSevere<FP>, DeathsPerCritical<FP>, StartDay<FP>, Seasonality<FP> >

Enumeration Type Documentation

InfectionState

enum mio::lsecir::InfectionState

strong

The InfectionState enum describes the basic categories for the infection state of persons.

Enumerator
Susceptible
Exposed
InfectedNoSymptoms
InfectedSymptoms
InfectedSevere
InfectedCritical
Recovered
Dead
Count

InfectionTransition

enum mio::lsecir::InfectionTransition

strong

The InfectionTransition enum describes the possible transitions of the infectious state of persons.

Enumerator
SusceptibleToExposed
ExposedToInfectedNoSymptoms
InfectedNoSymptomsToInfectedSymptoms
InfectedNoSymptomsToRecovered
InfectedSymptomsToInfectedSevere
InfectedSymptomsToRecovered
InfectedSevereToInfectedCritical
InfectedSevereToRecovered
InfectedCriticalToDead
InfectedCriticalToRecovered
Count