ode_secirts/model.h File Reference

#include "memilio/compartments/flow_model.h"
#include "memilio/compartments/simulation.h"
#include "memilio/compartments/flow_simulation.h"
#include "memilio/epidemiology/populations.h"
#include "ode_secirts/infection_state.h"
#include "ode_secirts/parameters.h"
#include "memilio/math/smoother.h"
#include "memilio/math/eigen_util.h"
#include <numbers>

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Classes
class	mio::osecirts::Model< FP >
class	mio::osecirts::Simulation< FP, BaseT >
	specialization of compartment model simulation for the SECIRTS model. More...

Namespaces
	mio
	A collection of classes to simplify handling of matrix shapes in meta programming.
	mio::osecirts

Typedefs
using	mio::osecirts::Flows = TypeList< Flow< InfectionState::SusceptibleNaive, InfectionState::ExposedNaive >, Flow< InfectionState::SusceptibleNaive, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::ExposedNaive, InfectionState::InfectedNoSymptomsNaive >, Flow< InfectionState::InfectedNoSymptomsNaive, InfectionState::InfectedSymptomsNaive >, Flow< InfectionState::InfectedNoSymptomsNaive, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::InfectedNoSymptomsNaiveConfirmed, InfectionState::InfectedSymptomsNaiveConfirmed >, Flow< InfectionState::InfectedNoSymptomsNaiveConfirmed, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::InfectedSymptomsNaive, InfectionState::InfectedSevereNaive >, Flow< InfectionState::InfectedSymptomsNaive, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::InfectedSymptomsNaiveConfirmed, InfectionState::InfectedSevereNaive >, Flow< InfectionState::InfectedSymptomsNaiveConfirmed, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::InfectedSevereNaive, InfectionState::InfectedCriticalNaive >, Flow< InfectionState::InfectedSevereNaive, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::InfectedSevereNaive, InfectionState::DeadNaive >, Flow< InfectionState::InfectedCriticalNaive, InfectionState::DeadNaive >, Flow< InfectionState::InfectedCriticalNaive, InfectionState::TemporaryImmunePartialImmunity >, Flow< InfectionState::SusceptiblePartialImmunity, InfectionState::ExposedPartialImmunity >, Flow< InfectionState::SusceptiblePartialImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::ExposedPartialImmunity, InfectionState::InfectedNoSymptomsPartialImmunity >, Flow< InfectionState::InfectedNoSymptomsPartialImmunity, InfectionState::InfectedSymptomsPartialImmunity >, Flow< InfectionState::InfectedNoSymptomsPartialImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedNoSymptomsPartialImmunityConfirmed, InfectionState::InfectedSymptomsPartialImmunityConfirmed >, Flow< InfectionState::InfectedNoSymptomsPartialImmunityConfirmed, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSymptomsPartialImmunity, InfectionState::InfectedSeverePartialImmunity >, Flow< InfectionState::InfectedSymptomsPartialImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSymptomsPartialImmunityConfirmed, InfectionState::InfectedSeverePartialImmunity >, Flow< InfectionState::InfectedSymptomsPartialImmunityConfirmed, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSeverePartialImmunity, InfectionState::InfectedCriticalPartialImmunity >, Flow< InfectionState::InfectedSeverePartialImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSeverePartialImmunity, InfectionState::DeadPartialImmunity >, Flow< InfectionState::InfectedCriticalPartialImmunity, InfectionState::DeadPartialImmunity >, Flow< InfectionState::InfectedCriticalPartialImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::SusceptibleImprovedImmunity, InfectionState::ExposedImprovedImmunity >, Flow< InfectionState::SusceptibleImprovedImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::ExposedImprovedImmunity, InfectionState::InfectedNoSymptomsImprovedImmunity >, Flow< InfectionState::InfectedNoSymptomsImprovedImmunity, InfectionState::InfectedSymptomsImprovedImmunity >, Flow< InfectionState::InfectedNoSymptomsImprovedImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedNoSymptomsImprovedImmunityConfirmed, InfectionState::InfectedSymptomsImprovedImmunityConfirmed >, Flow< InfectionState::InfectedNoSymptomsImprovedImmunityConfirmed, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSymptomsImprovedImmunity, InfectionState::InfectedSevereImprovedImmunity >, Flow< InfectionState::InfectedSymptomsImprovedImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSymptomsImprovedImmunityConfirmed, InfectionState::InfectedSevereImprovedImmunity >, Flow< InfectionState::InfectedSymptomsImprovedImmunityConfirmed, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSevereImprovedImmunity, InfectionState::InfectedCriticalImprovedImmunity >, Flow< InfectionState::InfectedSevereImprovedImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::InfectedSevereImprovedImmunity, InfectionState::DeadImprovedImmunity >, Flow< InfectionState::InfectedCriticalImprovedImmunity, InfectionState::DeadImprovedImmunity >, Flow< InfectionState::InfectedCriticalImprovedImmunity, InfectionState::TemporaryImmuneImprovedImmunity >, Flow< InfectionState::TemporaryImmunePartialImmunity, InfectionState::SusceptiblePartialImmunity >, Flow< InfectionState::TemporaryImmuneImprovedImmunity, InfectionState::SusceptibleImprovedImmunity >, Flow< InfectionState::SusceptibleImprovedImmunity, InfectionState::SusceptiblePartialImmunity >, Flow< InfectionState::SusceptiblePartialImmunity, InfectionState::SusceptibleNaive > >

Functions
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
FP	mio::osecirts::get_infections_relative (const Simulation< FP, Base > &model, FP t, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	get percentage of infections per total population. More...
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
auto	mio::osecirts::get_migration_factors (const Simulation< Base > &sim, FP, const Eigen::Ref< const Eigen::VectorX< FP >> &y)
	Get migration factors. More...
template<typename FP >
auto	mio::osecirts::simulate (FP t0, FP tmax, FP dt, const Model< FP > &model, std::unique_ptr< OdeIntegratorCore< FP >> &&integrator_core=nullptr)
	Specialization of simulate for SECIRS-type models using Simulation. More...
template<typename FP >
auto	mio::osecirts::simulate_flows (FP t0, FP tmax, FP dt, const Model< FP > &model, std::unique_ptr< OdeIntegratorCore< FP >> &&integrator_core=nullptr)
	Specialization of simulate for SECIRS-type models using the FlowSimulation. More...
template<typename FP , class Base = mio::Simulation<FP, Model<FP>>>
auto	mio::osecirts::test_commuters (Simulation< FP, Base > &sim, Eigen::Ref< Eigen::VectorX< FP >> migrated, FP time)
	Adjusts the state of commuters in a model, accounting for detection and mobility effects. More...