mio::oseirv::Model< FP > Class Template Reference

#include <model.h>

Inheritance diagram for mio::oseirv::Model< FP >:

Collaboration diagram for mio::oseirv::Model< FP >:

Public Types
using	ParameterSet = typename Base::ParameterSet
using	PopulationsType = typename Base::Populations
Public Types inherited from mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >
using	Base = CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
Public Types inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
using	Compartments = InfectionState
using	ParameterSet = Parameters< FP >
using	Populations = mio::Populations< FP, AgeGroup, InfectionState >

Public Member Functions
void	get_flows (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> flows) const override
	Model (const PopulationsType &pop, const ParameterSet &params)
	Model (int num_agegroups)
Public Member Functions inherited from mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >
	FlowModel (Args... args)
	Default constructor, forwarding args to Base constructor. More...
void	get_derivatives (Eigen::Ref< const Eigen::VectorX< FP >> flows, Eigen::Ref< Eigen::VectorX< FP >> dydt) const
	Compute the right-hand-side of the ODE dydt = f(y, t) from flow values. More...
void	get_derivatives (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> dydt) const final
	Compute the right-hand-side f(y, t) of the ODE and store it in dydt. More...
constexpr size_t	get_flat_flow_index () const
	A flat index into an array of flows (as computed by get_flows), if the only used category in Pop is Comp. More...
size_t	get_flat_flow_index (const FlowIndex &indices) const
	A flat index into an array of flows (as computed by get_flows), given the indices of each category. More...
Eigen::VectorX< FP >	get_initial_flows () const
	Initial values for flows. More...
Public Member Functions inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
bool	apply_constraints ()
	Checks whether the model satisfies all constraints. More...
bool	check_constraints () const
	Checks that the model satisfies all constraints (e.g. More...
	CompartmentalModel (CompartmentalModel &&)=default
	CompartmentalModel (const CompartmentalModel &)=default
	CompartmentalModel (Populations const &po, ParameterSet const &pa)
	CompartmentalModel default constructor. More...
void	eval_right_hand_side (Eigen::Ref< const Eigen::VectorX< FP >> pop, Eigen::Ref< const Eigen::VectorX< FP >> y, FP t, Eigen::Ref< Eigen::VectorX< FP >> dydt) const
	This function evaluates the right-hand-side f of the ODE dydt = f(y, t). More...
Eigen::VectorX< FP >	get_initial_values () const
	Get the initial conditions for the ODE dydt = f(y, t). More...
CompartmentalModel &	operator= (CompartmentalModel &&)=default
CompartmentalModel &	operator= (const CompartmentalModel &)=default
virtual	~CompartmentalModel ()=default

Private Types
using	Base = FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >

Additional Inherited Members
Public Attributes inherited from mio::CompartmentalModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP > >
ParameterSet	parameters
Populations	populations

Member Typedef Documentation

Base

template<typename FP >

using mio::oseirv::Model< FP >::Base = FlowModel<FP, InfectionState, mio::Populations<FP, AgeGroup, InfectionState>, Parameters<FP>, Flows>

private

ParameterSet

template<typename FP >

using mio::oseirv::Model< FP >::ParameterSet = typename Base::ParameterSet

PopulationsType

template<typename FP >

using mio::oseirv::Model< FP >::PopulationsType = typename Base::Populations

Constructor & Destructor Documentation

Model() [1/2]

template<typename FP >

mio::oseirv::Model< FP >::Model ( const PopulationsType &  pop, const ParameterSet &  params  )

inline

Model() [2/2]

template<typename FP >

mio::oseirv::Model< FP >::Model ( int  num_agegroups )

inline

Member Function Documentation

get_flows()

template<typename FP >

void mio::oseirv::Model< FP >::get_flows ( Eigen::Ref< const Eigen::VectorX< FP >>  pop, Eigen::Ref< const Eigen::VectorX< FP >>  y, FP  t, Eigen::Ref< Eigen::VectorX< FP >>  flows  ) const

inlineoverridevirtual

Implements mio::FlowModel< FP, InfectionState, mio::Populations< FP, AgeGroup, InfectionState >, Parameters< FP >, Flows >.