mio::oseirv Namespace Reference

Classes
struct	BaselineTransmissibility
	Baseline transmissibility R_e (dimensionless). More...
struct	ClusteringExponent
	Clustering/concavity parameter ρ (dimensionless). More...
struct	ContactPatternsHealthy
	Contact patterns of healthy people (age-structured contact frequencies). More...
struct	ContactPatternsSick
	Contact patterns of symptomatically sick people (age-structured contact frequencies). More...
class	Model
struct	OutsideFoI
	Outside force of infection in 1/week. More...
class	Parameters
	Parameter set for the age-resolved SEIRV model (S,E,I,R plus vaccinated states) as per the appendix. More...
struct	SeasonalityAmplitude
	Seasonality amplitude (dimensionless). More...
struct	SeasonalityShiftPerSeason
	Season-specific fine shift t_s. More...
struct	SeasonalityShiftPerSubtype
	Subtype-specific seasonal shift t_z. More...
struct	SickMixing
	Mixing parameter m for “sick” contacts (dimensionless). More...
struct	SusceptibilityByAge
	Age-specific baseline susceptibility σ_i. More...
struct	SusceptibleFraction
	Fraction of the population that remains susceptible at t0 phi (dimensionless, typically in [0,1]). More...
struct	TimeExposed
	Mean time spent in the exposed compartment in weeks. More...
struct	TimeInfected
	Mean time spent in the infectious compartment in weeks. More...
struct	VaccineCoverage
	Vaccination coverage VC_i at t0 (dimensionless, in [0,1]). More...
struct	VaccineEffectiveness
	Vaccine effectiveness VE_i (dimensionless, in [0,1]). More...

Typedefs
using	Flows = TypeList< Flow< InfectionState::Susceptible, InfectionState::Exposed >, Flow< InfectionState::SusceptibleVaccinated, InfectionState::ExposedVaccinated >, Flow< InfectionState::Exposed, InfectionState::Infected >, Flow< InfectionState::ExposedVaccinated, InfectionState::InfectedVaccinated >, Flow< InfectionState::Infected, InfectionState::Recovered >, Flow< InfectionState::InfectedVaccinated, InfectionState::RecoveredVaccinated > >
template<class FP >
using	ParametersBase = ParameterSet< BaselineTransmissibility< FP >, TimeExposed< FP >, TimeInfected< FP >, SeasonalityAmplitude< FP >, SeasonalityShiftPerSubtype< FP >, SeasonalityShiftPerSeason< FP >, OutsideFoI< FP >, ClusteringExponent< FP >, SickMixing< FP >, ContactPatternsHealthy< FP >, ContactPatternsSick< FP >, SusceptibilityByAge< FP >, VaccineCoverage< FP >, VaccineEffectiveness< FP >, SusceptibleFraction< FP > >

Enumerations
enum class	InfectionState {   Susceptible , SusceptibleVaccinated , Exposed , ExposedVaccinated ,   Infected , InfectedVaccinated , Recovered , RecoveredVaccinated ,   Count }

Typedef Documentation

Flows

using mio::oseirv::Flows = typedef TypeList<Flow<InfectionState::Susceptible, InfectionState::Exposed>, Flow<InfectionState::SusceptibleVaccinated, InfectionState::ExposedVaccinated>, Flow<InfectionState::Exposed, InfectionState::Infected>, Flow<InfectionState::ExposedVaccinated, InfectionState::InfectedVaccinated>, Flow<InfectionState::Infected, InfectionState::Recovered>, Flow<InfectionState::InfectedVaccinated, InfectionState::RecoveredVaccinated> >

ParametersBase

template<class FP >

using mio::oseirv::ParametersBase = typedef ParameterSet<BaselineTransmissibility<FP>, TimeExposed<FP>, TimeInfected<FP>, SeasonalityAmplitude<FP>, SeasonalityShiftPerSubtype<FP>, SeasonalityShiftPerSeason<FP>, OutsideFoI<FP>, ClusteringExponent<FP>, SickMixing<FP>, ContactPatternsHealthy<FP>, ContactPatternsSick<FP>, SusceptibilityByAge<FP>, VaccineCoverage<FP>, VaccineEffectiveness<FP>, SusceptibleFraction<FP> >

Enumeration Type Documentation

InfectionState

enum mio::oseirv::InfectionState

strong

Enumerator
Susceptible
SusceptibleVaccinated
Exposed
ExposedVaccinated
Infected
InfectedVaccinated
Recovered
RecoveredVaccinated
Count